A multi-modal, multi-variate pattern analysis (MVPA) toolbox in Matlab / GNU Octave for cognitive neuroscientists.
CoSMoMVPA¶
State-of-the art, yet simple to use MVPA implementations.
Runs on the Matlab and GNU Octave platform, on MS Windows, OSX, and GNU/Linux.
Handles fMRI volumetric, fMRI surface-based, and MEEG data through a uniform data structure.
Support for a wide range of data formats.
Searchlights in the volume, on the surface, over sensors, time bins, and frequency bands.
Multiple-comparison correction using Threshold-Free Cluster Enhancement Monte Carlo simulations.
Extensive documentation, including a variety of runnable scripts and implementation exercises (with solutions).
Is Free/Open Source Software (MIT License), see http://github.com/CoSMoMVPA/CoSMoMVPA.
News¶
Continuous integration testing is now enabled using github actions. For now Octave only; Matlab is planned also.
Analysis gallery¶
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Changes since last month¶
Summary¶
[BIG] 1 major changes
[BLD] 16 changes in build system
[CLN] 6 clean-ups
[DOC] 4 code documentation changes
[ENH] 1 enhancements
[OCTV] 2 Octave-compatibility improvements
[RF] 1 refactorings
Major changes¶
commit 8c328fba3b5f7e8d2b58abd962059a0501b8f1f9 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sat Sep 13 14:49:19 2025 +0200 BIG+CLN: code reformatting using MISS_HIT mvpa/cosmo_align.m | 152 +- mvpa/cosmo_anova_feature_selector.m | 84 +- mvpa/cosmo_average_samples.m | 449 ++--- mvpa/cosmo_balance_dataset.m | 150 +- mvpa/cosmo_balance_partitions.m | 418 ++-- mvpa/cosmo_cartprod.m | 220 +- mvpa/cosmo_check_dataset.m | 509 +++-- mvpa/cosmo_check_external.m | 1017 +++++----- mvpa/cosmo_check_neighborhood.m | 381 ++-- mvpa/cosmo_check_partitions.m | 367 ++-- mvpa/cosmo_chunkize.m | 346 ++-- mvpa/cosmo_classify_knn.m | 149 +- mvpa/cosmo_classify_lda.m | 306 +-- mvpa/cosmo_classify_libsvm.m | 227 +-- mvpa/cosmo_classify_matlabcsvm.m | 164 +- mvpa/cosmo_classify_matlabsvm.m | 123 +- mvpa/cosmo_classify_matlabsvm_2class.m | 226 +-- mvpa/cosmo_classify_meta_feature_selection.m | 117 +- mvpa/cosmo_classify_naive_bayes.m | 167 +- mvpa/cosmo_classify_nn.m | 88 +- mvpa/cosmo_classify_svm.m | 166 +- mvpa/cosmo_cluster_neighborhood.m | 638 +++--- mvpa/cosmo_clusterize.m | 236 ++- mvpa/cosmo_config.m | 361 ++-- mvpa/cosmo_confusion_matrix.m | 216 +- mvpa/cosmo_convert_neighborhood.m | 238 ++- mvpa/cosmo_corr.m | 135 +- mvpa/cosmo_correlation_measure.m | 800 ++++---- mvpa/cosmo_cross_neighborhood.m | 340 ++-- mvpa/cosmo_crossvalidate.m | 396 ++-- mvpa/cosmo_crossvalidation_measure.m | 604 +++--- mvpa/cosmo_dataset_slice_fa.m | 62 +- mvpa/cosmo_dataset_slice_sa.m | 64 +- mvpa/cosmo_dim_find.m | 238 ++- mvpa/cosmo_dim_generalization_measure.m | 666 +++--- mvpa/cosmo_dim_insert.m | 236 ++- mvpa/cosmo_dim_match.m | 344 ++-- mvpa/cosmo_dim_prune.m | 301 ++- mvpa/cosmo_dim_remove.m | 165 +- mvpa/cosmo_dim_rename.m | 135 +- mvpa/cosmo_dim_slice.m | 82 +- mvpa/cosmo_dim_transpose.m | 289 ++- mvpa/cosmo_dir.m | 230 ++- mvpa/cosmo_disp.m | 840 ++++---- mvpa/cosmo_dissimilarity_matrix_measure.m | 535 +++-- mvpa/cosmo_distatis.m | 638 +++--- mvpa/cosmo_find_local_extrema.m | 312 ++- mvpa/cosmo_flatten.m | 386 ++-- mvpa/cosmo_fmri_convert_xform.m | 304 ++- mvpa/cosmo_fmri_dataset.m | 2227 ++++++++++----------- mvpa/cosmo_fmri_deoblique.m | 145 +- mvpa/cosmo_fmri_orientation.m | 155 +- mvpa/cosmo_fmri_reorient.m | 281 ++- mvpa/cosmo_fx.m | 172 +- mvpa/cosmo_independent_samples_partitioner.m | 644 +++--- mvpa/cosmo_index_unique.m | 266 ++- mvpa/cosmo_interval_neighborhood.m | 245 ++- mvpa/cosmo_isequaln.m | 96 +- mvpa/cosmo_isfield.m | 175 +- mvpa/cosmo_make_temp_filename.m | 144 +- mvpa/cosmo_map2fmri.m | 781 ++++---- mvpa/cosmo_map2meeg.m | 613 +++--- mvpa/cosmo_map2surface.m | 413 ++-- mvpa/cosmo_map_pca.m | 238 ++- mvpa/cosmo_mask_dim_intersect.m | 244 ++- mvpa/cosmo_match.m | 191 +- mvpa/cosmo_measure_clusters.m | 419 ++-- mvpa/cosmo_meeg_baseline_correct.m | 243 ++- mvpa/cosmo_meeg_chan_neighborhood.m | 542 +++-- mvpa/cosmo_meeg_chan_neighbors.m | 876 ++++---- mvpa/cosmo_meeg_chantype.m | 249 ++- mvpa/cosmo_meeg_dataset.m | 1217 ++++++----- mvpa/cosmo_meeg_find_layout.m | 386 ++-- mvpa/cosmo_meeg_layout_collection.m | 340 ++-- mvpa/cosmo_meeg_read_layout.m | 149 +- mvpa/cosmo_meeg_senstype2layout_mapping.m | 406 ++-- mvpa/cosmo_meeg_senstype_collection.m | 849 ++++---- mvpa/cosmo_meta_feature_selection_classifier.m | 62 +- mvpa/cosmo_montecarlo_cluster_stat.m | 1155 ++++++----- mvpa/cosmo_montecarlo_phase_stat.m | 436 ++-- mvpa/cosmo_naive_bayes_classifier_searchlight.m | 487 +++-- mvpa/cosmo_nchoosek_partitioner.m | 962 +++++---- mvpa/cosmo_neighborhood_split.m | 469 +++-- mvpa/cosmo_nfold_partitioner.m | 181 +- mvpa/cosmo_normalize.m | 436 ++-- mvpa/cosmo_norminv.m | 58 +- mvpa/cosmo_notify_test_skipped.m | 132 +- mvpa/cosmo_oddeven_partitioner.m | 213 +- mvpa/cosmo_overlap.m | 221 +- mvpa/cosmo_parallel_get_nproc_available.m | 264 ++- mvpa/cosmo_parcellfun.m | 158 +- mvpa/cosmo_pca.m | 210 +- mvpa/cosmo_pdist.m | 144 +- mvpa/cosmo_phase_itc.m | 210 +- mvpa/cosmo_phase_stat.m | 170 +- mvpa/cosmo_plot_slices.m | 208 +- mvpa/cosmo_publish_run_scripts.m | 401 ++-- mvpa/cosmo_rand.m | 249 ++- mvpa/cosmo_randomize_targets.m | 205 +- mvpa/cosmo_randperm.m | 119 +- mvpa/cosmo_remove_useless_data.m | 223 +-- mvpa/cosmo_run_tests.m | 277 ++- mvpa/cosmo_sample_unique.m | 143 +- mvpa/cosmo_searchlight.m | 544 +++-- mvpa/cosmo_set_path.m | 79 +- mvpa/cosmo_show_progress.m | 170 +- mvpa/cosmo_singleton_neighborhood.m | 176 +- mvpa/cosmo_skip_test_if_no_external.m | 96 +- mvpa/cosmo_slice.m | 506 ++--- mvpa/cosmo_sphere_offsets.m | 128 +- mvpa/cosmo_spherical_neighborhood.m | 796 ++++---- mvpa/cosmo_split.m | 276 ++- mvpa/cosmo_squareform.m | 133 +- mvpa/cosmo_stack.m | 486 +++-- mvpa/cosmo_stat.m | 1045 +++++----- mvpa/cosmo_statcode.m | 514 +++-- mvpa/cosmo_strjoin.m | 131 +- mvpa/cosmo_strsplit.m | 202 +- mvpa/cosmo_structjoin.m | 226 ++- mvpa/cosmo_surface_dataset.m | 628 +++--- mvpa/cosmo_surficial_neighborhood.m | 905 ++++----- mvpa/cosmo_synthetic_dataset.m | 986 +++++---- mvpa/cosmo_tail.m | 157 +- mvpa/cosmo_target_dsm_corr_measure.m | 615 +++--- mvpa/cosmo_tiedrank.m | 211 +- mvpa/cosmo_type.m | 30 +- mvpa/cosmo_unflatten.m | 363 ++-- mvpa/cosmo_vol_coordinates.m | 188 +- mvpa/cosmo_vol_grid_convert.m | 330 ++- mvpa/cosmo_warning.m | 191 +- mvpa/cosmo_winner_indices.m | 169 +- mvpa/cosmo_wtf.m | 310 ++- tests/test_align.m | 127 +- tests/test_anova_feature_selector.m | 38 +- tests/test_average_samples.m | 501 +++-- tests/test_balance_dataset.m | 121 +- tests/test_balance_partitions.m | 392 ++-- tests/test_cartprod.m | 62 +- tests/test_check_dataset.m | 160 +- tests/test_check_external.m | 88 +- tests/test_check_neighborhood.m | 225 +-- tests/test_check_partitions.m | 173 +- tests/test_chunkize.m | 289 ++- tests/test_classify.m | 590 +++--- tests/test_cluster_neighborhood.m | 653 +++--- tests/test_clusterize.m | 61 +- tests/test_config.m | 148 +- tests/test_confusion_matrix.m | 91 +- tests/test_convert_neighborhood.m | 113 +- tests/test_corr.m | 116 +- tests/test_correlation_measure.m | 328 ++- tests/test_cosmo_dataset_operations.m | 89 +- tests/test_cosmo_fmri_dataset.m | 179 +- tests/test_cosmo_notify_test_skipped.m | 82 +- tests/test_cosmo_skip_test_if_no_external.m | 37 +- tests/test_cross_neighborhood.m | 355 ++-- tests/test_crossvalidate.m | 79 +- tests/test_crossvalidation_measure.m | 579 +++--- tests/test_dim_find.m | 104 +- tests/test_dim_generalization_measure.m | 382 ++-- tests/test_dim_insert.m | 157 +- tests/test_dim_match.m | 209 +- tests/test_dim_prune.m | 223 +-- tests/test_dim_remove.m | 91 +- tests/test_dim_rename.m | 44 +- tests/test_dim_slice.m | 51 +- tests/test_dim_transpose.m | 168 +- tests/test_dir.m | 143 +- tests/test_disp.m | 427 ++-- tests/test_dissimilarity_matrix_measure.m | 116 +- tests/test_distatis.m | 281 ++- tests/test_external_neuroelf.m | 90 +- tests/test_external_surfing.m | 236 ++- tests/test_find_local_extrema.m | 90 +- tests/test_flatten.m | 160 +- tests/test_fmri_convert_xform.m | 92 +- tests/test_fmri_dataset.m | 722 ++++--- tests/test_fmri_deoblique.m | 39 +- tests/test_fmri_io.m | 699 ++++--- tests/test_fmri_orientation.m | 255 ++- tests/test_fx.m | 140 +- tests/test_independent_samples_partitioner.m | 455 ++--- tests/test_index_unique.m | 209 +- tests/test_interval_neighborhood.m | 185 +- tests/test_isequaln.m | 105 +- tests/test_isfield.m | 84 +- tests/test_map_pca.m | 338 ++-- tests/test_mask_dim_intersect.m | 208 +- tests/test_match.m | 123 +- tests/test_measure_clusters.m | 164 +- tests/test_meeg_baseline_correct.m | 282 ++- tests/test_meeg_chan_neighborhood.m | 160 +- tests/test_meeg_chan_neighbors.m | 765 ++++--- tests/test_meeg_chantype.m | 188 +- tests/test_meeg_find_layout.m | 436 ++-- tests/test_meeg_io.m | 901 ++++----- tests/test_meeg_layout_collection.m | 257 ++- tests/test_meeg_read_layout.m | 169 +- tests/test_meeg_senstype_collection.m | 345 ++-- tests/test_meeg_source.m | 360 ++-- tests/test_montecarlo_cluster_stat.m | 909 ++++----- tests/test_montecarlo_cluster_stat_distribution.m | 150 +- tests/test_montecarlo_phase_stat.m | 399 ++-- tests/test_naive_bayes_classifier_searchlight.m | 251 ++- tests/test_neighborhood_split.m | 138 +- tests/test_normalize.m | 317 ++- tests/test_norminv.m | 56 +- tests/test_oddeven_partitioner.m | 128 +- tests/test_parallel_get_nproc_available.m | 212 +- tests/test_parcellfun.m | 160 +- tests/test_partitions.m | 258 ++- tests/test_pca.m | 260 ++- tests/test_pdist.m | 41 +- tests/test_phase_itc.m | 170 +- tests/test_phase_stat.m | 278 ++- tests/test_plot_slices.m | 33 +- tests/test_publish_run_scripts.m | 163 +- tests/test_rand.m | 101 +- tests/test_randomize_targets.m | 62 +- tests/test_randperm.m | 156 +- tests/test_remove_useless_data.m | 138 +- tests/test_run_tests.m | 169 +- tests/test_sample_unique.m | 148 +- tests/test_searchlight.m | 215 +- tests/test_show_progress.m | 94 +- tests/test_singleton_neighborhood.m | 87 +- tests/test_slice.m | 251 ++- tests/test_spherical_neighborhood.m | 644 +++--- tests/test_split.m | 91 +- tests/test_squareform.m | 149 +- tests/test_stack.m | 158 +- tests/test_stat.m | 729 ++++--- tests/test_statcode.m | 207 +- tests/test_strjoin.m | 41 +- tests/test_strsplit.m | 76 +- tests/test_structjoin.m | 101 +- tests/test_surface_io.m | 389 ++-- tests/test_surficial_io_gifti.m | 320 ++- tests/test_surficial_io_niml_dset.m | 291 ++- tests/test_surficial_neighborhood.m | 818 ++++---- tests/test_synthetic_dataset.m | 93 +- tests/test_tail.m | 135 +- tests/test_target_dsm_corr_measure.m | 570 +++--- tests/test_tiedrank.m | 218 +- tests/test_type.m | 49 +- tests/test_vol_coordinates.m | 248 ++- tests/test_vol_grid_convert.m | 99 +- tests/test_warning.m | 33 +- tests/test_wtf.m | 105 +- 249 files changed, 36041 insertions(+), 37903 deletions(-)
All changes¶
commit fd850e3fea5d44a817a47a2324d0382139bbe9d3 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:41:37 2025 +0200 DOC: update news doc/source/news.rst | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) commit f1d22cf8487f1ac0124db16812d622a5ddac29f9 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:31:36 2025 +0200 BLD: use octave to install package .github/workflows/CI_octave.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit b8e9b7c39ced9b51b044efa55892e85cecaa4577 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:30:20 2025 +0200 BLD: include statistics package .github/workflows/CI_octave.yml | 4 ++++ 1 file changed, 4 insertions(+) commit fc6bba6e2cc6c9db29c704501ded8827df631169 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:24:20 2025 +0200 BLD: run tests from parent directory .github/workflows/CI_octave.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit fdda94b2c237fac10e2d99d8cae2cc8f1da228d1 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:11:43 2025 +0200 BLD: install octave-dev .github/workflows/CI_octave.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit ef23955fda3ad103b7feb966e951e4e6482c6a6a Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:08:13 2025 +0200 BLD: use proper installation order .github/workflows/CI_octave.yml | 9 --------- 1 file changed, 9 deletions(-) commit 8e5c163046374bb1f76cc8bea3ef1b82ea2bcb69 Merge: 361306e8 57d3273a Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:06:03 2025 +0200 BLD: use proper installation order commit 57d3273a9f37e0ffb459398f6630a251df1ea754 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:04:29 2025 +0200 BLD: install MOcov after installing Octave .github/workflows/CI_octave.yml | 5 ++--- 1 file changed, 2 insertions(+), 3 deletions(-) commit 9927e011812b8869de0fe3add741608944701915 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 19:01:43 2025 +0200 BLD support github pages Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit 361306e87e1ea30c844dd07e123b3618b20fb877 Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com> Date: Sun Sep 21 19:00:18 2025 +0200 BLD: CI for Octave (#216) * BLD: CI for Octave * BLD: fix invalid syntax * BLD: fix invalid syntax * BLD: fix invalid syntax * BLD: fix invalid syntax * BLD: fix invalid syntax --------- Co- authored-by: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> .github/workflows/CI_octave.yml | 67 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 67 insertions(+) commit c7148a97541129fc45e84b1318eb4e06208c3ec8 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 18:58:21 2025 +0200 BLD: fix invalid syntax .github/workflows/CI_octave.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit 41bb153f476ea846b036391fc09fc45771a22d2d Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 18:56:59 2025 +0200 BLD: fix invalid syntax .github/workflows/CI_octave.yml | 1 + 1 file changed, 1 insertion(+) commit 54cdbcd2685419748c1f17724b1b12c2b2abe8c3 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 18:53:11 2025 +0200 BLD: fix invalid syntax .github/workflows/CI_octave.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit f1b81a83189783275f404e48f5fb3977842b6d3f Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 18:50:46 2025 +0200 BLD: fix invalid syntax .github/workflows/CI_octave.yml | 1 - 1 file changed, 1 deletion(-) commit 2ac29f8e88da0e282f703fbc3568517412884e83 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 18:49:29 2025 +0200 BLD: fix invalid syntax .github/workflows/CI_octave.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) commit 659831bae10ac61f53782b597be9a3c16aa6956f Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sun Sep 21 18:42:28 2025 +0200 BLD: CI for Octave .github/workflows/CI_octave.yml | 67 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 67 insertions(+) commit 84d03d61a6b3217ae858cce62c02d0461d020fa6 Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com> Date: Sun Sep 21 18:38:00 2025 +0200 BLD+CLN+DOC: minor updates and compatibility improvements * BLD+DOC: use external links properly * FIX: remove incorrect semicolon * CLN: apply miss_hit fixes * DOC: fix typos using codespell * FIX: allow surface searchlights without geodesic distance metric --------- Co-authored-by: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> .codespellrc | 2 +- .pyproject.toml | 2 + Changelog | 2 +- Makefile | 22 + doc/source/cimec2014_intro.rst | 2 +- doc/source/cimec2016_intro.rst | 20 +- doc/source/cogneuro_experience.rst | 2 +- doc/source/conf.py | 206 +++--- doc/source/contribute.rst | 18 +- doc/source/cosmo2013_intro.rst | 2 +- .../.github/workflows/static.yml | 43 ++ doc/source/cosmomvpa_concepts.rst | 24 +- doc/source/ex_classify_double_dipping.rst | 2 +- doc/source/ex_classify_lda.rst | 4 +- doc/source/ex_classify_naive_bayes.rst | 4 +- doc/source/ex_classify_svm.rst | 2 +- doc/source/ex_crossvalidation_measure.rst | 4 +- doc/source/ex_dataset_basics.rst | 14 +- doc/source/ex_measures.rst | 4 +- doc/source/ex_meeg_searchlight.rst | 4 +- doc/source/ex_meeg_time_generalization.rst | 2 +- doc/source/ex_multiple_comparisons.rst | 6 +- doc/source/ex_neighborhood.rst | 2 +- doc/source/ex_nfold_crossvalidation.rst | 2 +- doc/source/ex_rsa_tutorial.rst | 4 +- doc/source/ex_rsa_visualization.rst | 4 +- doc/source/ex_searchlight_measure.rst | 4 +- doc/source/ex_sphere_offsets.rst | 4 +- doc/source/ex_splithalf_correlations.rst | 8 +- doc/source/ex_surface_searchlight.rst | 2 +- doc/source/ex_write_classify_nn.rst | 6 +- doc/source/faq.rst | 28 +- doc/source/labman2017_intro.rst | 4 +- doc/source/matlab_experience.rst | 2 +- doc/source/mvpa_concepts.rst | 10 +- doc/source/news.rst | 2 +- doc/source/nmsm2019_intro.rst | 4 +- doc/source/prni2016_intro.rst | 4 +- doc/source/references.bib | 4 +- doc/source/rhul2016.rst | 2 +- doc/source/rhul2016_intro.rst | 6 +- doc/source/tips.rst | 2 +- doc/tools/build_demo_images.py | 148 ++-- doc/tools/matlab2rst.py | 814 ++++++++++----------- doc/tools/summarize_git_log.py | 334 +++++---- examples/cosmo_wizard_set_config.m | 329 ++++----- examples/demo_fmri_correlation_searchlight.m | 41 +- examples/demo_fmri_distatis.m | 66 +- examples/demo_fmri_rois.m | 190 +++-- examples/demo_fmri_searchlight_lda.m | 35 +- examples/demo_fmri_searchlight_naive_bayes.m | 38 +- examples/demo_fmri_searchlight_rsm.m | 124 ++-- examples/demo_meeg_dataset_operations.m | 64 +- examples/demo_meeg_timefreq_searchlight.m | 101 ++- examples/demo_meeg_timelock_searchlight.m | 88 ++- examples/demo_meeg_timeseries_classification.m | 115 ++- examples/demo_meeg_timeseries_generalization.m | 157 ++-- examples/demo_surface_searchlight_lda.m | 165 ++--- examples/demo_surface_tfce.m | 89 ++- examples/run_anatomical_dataset_basics.m | 59 +- examples/run_bad_double_dipping_analysis.m | 40 +- examples/run_classify_lda.m | 121 ++- examples/run_classify_naive_bayes.m | 32 +- examples/run_classify_svm.m | 52 +- examples/run_compare_dsm.m | 70 +- examples/run_correlation_measure.m | 111 ++- examples/run_cross_validation.m | 81 +- examples/run_crossvalidation_measure.m | 90 +-- examples/run_crossvalidation_searchlight.m | 40 +- examples/run_dataset_basics.m | 52 +- examples/run_demean.m | 46 +- examples/run_feature_selection_classifier.m | 45 +- .../run_fmri_correlation_searchlight_trivial.m | 41 +- examples/run_load_datasets.m | 24 +- examples/run_measure_searchlight.m | 29 +- examples/run_meeg_time_generalization.m | 87 ++- examples/run_meeg_time_generalization_mcc.m | 143 ++-- examples/run_meeg_timefreq_measures.m | 107 ++- examples/run_meeg_timelock_measures.m | 165 ++--- examples/run_multiple_comparison_correction.m | 61 +- examples/run_nfold_crossvalidate.m | 106 +-- examples/run_nifti_basics.m | 88 +-- examples/run_operations_on_datasets.m | 81 +- examples/run_permutation_test.m | 56 +- examples/run_roi_neighborhood.m | 137 ++-- examples/run_rsa_visualize.m | 67 +- examples/run_rsm_measure_searchlight.m | 58 +- examples/run_setting_sample_attr.m | 38 +- examples/run_sphere_offsets.m | 20 +- examples/run_sphere_offsets_searchlight.m | 130 ++-- examples/run_spherical_neighborhood_searchlight.m | 85 ++- examples/run_splithalf_correlations.m | 122 ++- examples/run_splithalf_correlations_searchlight.m | 44 +- examples/run_splithalf_correlations_single_sub.m | 99 ++- examples/run_surface_searchlight.m | 160 ++-- external/NIfTI_20140122/rri_select_file.m | 2 +- miss_hit.cfg | 25 + mvpa/cosmo_map2meeg.m | 2 +- mvpa/cosmo_meeg_dataset.m | 2 +- mvpa/cosmo_montecarlo_cluster_stat.m | 14 +- mvpa/cosmo_surface_dataset.m | 4 +- tests/test_average_samples.m | 6 +- tests/test_cluster_neighborhood.m | 2 +- tests/test_meeg_chan_neighbors.m | 112 +-- tests/test_meeg_chantype.m | 2 +- tests/test_meeg_read_layout.m | 2 +- tests/test_naive_bayes_classifier_searchlight.m | 3 +- tests/test_searchlight.m | 2 +- tests/test_surficial_io_gifti.m | 24 +- tests/test_surficial_io_niml_dset.m | 32 +- tests/test_surficial_neighborhood.m | 2 +- tests/test_vol_coordinates.m | 8 +- tools/travis_after_all.py | 131 ++-- 113 files changed, 3243 insertions(+), 3312 deletions(-) commit 227184fb93d0b026e01a5a76c11c5040517d25d0 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sat Sep 13 17:48:00 2025 +0200 CLN: remove unused code doc/tools/matlab2rst.py | 3 --- 1 file changed, 3 deletions(-) commit b3ce0b96588c8e02c8a86a305a5a58fefc375b9e Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com> Date: Sat Sep 13 17:44:53 2025 +0200 DOC+BLD: update sphinx build configuration (#214) * DOC: update files to build with recent sphinx-build * NF: include codespell configuration --------- Co-authored-by: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> .codespellrc | 3 +++ doc/source/conf.py | 11 +++++++---- doc/source/download.rst | 2 -- doc/source/ex_classify_double_dipping.rst | 2 +- doc/source/ex_classify_lda.rst | 2 +- doc/source/ex_classify_naive_bayes.rst | 2 +- doc/source/ex_dataset_basics.rst | 8 ++++---- doc/source/ex_measures.rst | 4 ++-- doc/source/ex_meeg_searchlight.rst | 4 ++-- doc/source/ex_meeg_time_generalization.rst | 2 +- doc/source/ex_multiple_comparisons.rst | 4 ++-- doc/source/ex_neighborhood.rst | 2 +- doc/source/ex_nfold_crossvalidation.rst | 2 +- doc/source/ex_rsa_tutorial.rst | 4 ++-- doc/source/ex_rsa_visualization.rst | 2 +- doc/source/ex_searchlight_measure.rst | 4 ++-- doc/source/ex_sphere_offsets.rst | 2 +- doc/source/ex_splithalf_correlations.rst | 4 ++-- doc/source/ex_surface_searchlight.rst | 2 +- doc/source/ex_write_classify_nn.rst | 2 +- doc/source/faq.rst | 2 +- doc/source/labman2017_intro.rst | 2 +- doc/source/news.rst | 2 +- doc/source/nmsm2019_intro.rst | 2 +- doc/source/prni2016_intro.rst | 2 +- doc/tools/matlab2rst.py | 9 ++++++--- 26 files changed, 47 insertions(+), 40 deletions(-) commit 7d5a45c3a3902875b34ac2a0236a09e2be41d7f9 Merge: 74ed3185 bfe0035d Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com> Date: Sat Sep 13 15:12:55 2025 +0200 CLN: cleanup / typo's fixed using MISS_HIT and codespell CLN: cleanup / typo's fixed using MISS_HIT and codespell commit bfe0035de299a53fe962b13afd739a891ebb810c Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sat Sep 13 15:06:07 2025 +0200 CLN: fix typos using codespell mvpa/cosmo_align.m | 2 +- mvpa/cosmo_average_samples.m | 2 +- mvpa/cosmo_balance_partitions.m | 10 +++++----- mvpa/cosmo_check_external.m | 4 ++-- mvpa/cosmo_chunkize.m | 2 +- mvpa/cosmo_classify_naive_bayes.m | 2 +- mvpa/cosmo_classify_nn.m | 2 +- mvpa/cosmo_classify_svm.m | 6 +++--- mvpa/cosmo_cluster_neighborhood.m | 2 +- mvpa/cosmo_clusterize.m | 4 ++-- mvpa/cosmo_config.m | 6 +++--- mvpa/cosmo_cross_neighborhood.m | 2 +- mvpa/cosmo_crossvalidation_measure.m | 4 ++-- mvpa/cosmo_dim_generalization_measure.m | 2 +- mvpa/cosmo_dir.m | 4 ++-- mvpa/cosmo_disp.m | 2 +- mvpa/cosmo_find_local_extrema.m | 2 +- mvpa/cosmo_fmri_convert_xform.m | 4 ++-- mvpa/cosmo_fmri_dataset.m | 6 +++--- mvpa/cosmo_fx.m | 2 +- mvpa/cosmo_independent_samples_partitioner.m | 2 +- mvpa/cosmo_map2fmri.m | 6 +++--- mvpa/cosmo_map2meeg.m | 4 ++-- mvpa/cosmo_map_pca.m | 6 +++--- mvpa/cosmo_mask_dim_intersect.m | 2 +- mvpa/cosmo_match.m | 2 +- mvpa/cosmo_measure_clusters.m | 4 ++-- mvpa/cosmo_meeg_chan_neighbors.m | 2 +- mvpa/cosmo_meeg_dataset.m | 4 ++-- mvpa/cosmo_meeg_senstype_collection.m | 4 ++-- mvpa/cosmo_montecarlo_cluster_stat.m | 12 ++++++------ mvpa/cosmo_montecarlo_phase_stat.m | 4 ++-- mvpa/cosmo_nchoosek_partitioner.m | 4 ++-- mvpa/cosmo_normalize.m | 2 +- mvpa/cosmo_overlap.m | 2 +- mvpa/cosmo_pca.m | 2 +- mvpa/cosmo_phase_itc.m | 6 +++--- mvpa/cosmo_plot_slices.m | 6 +++--- mvpa/cosmo_publish_run_scripts.m | 2 +- mvpa/cosmo_randperm.m | 2 +- mvpa/cosmo_sample_unique.m | 2 +- mvpa/cosmo_searchlight.m | 4 ++-- mvpa/cosmo_sphere_offsets.m | 2 +- mvpa/cosmo_spherical_neighborhood.m | 2 +- mvpa/cosmo_stack.m | 2 +- mvpa/cosmo_stat.m | 10 +++++----- mvpa/cosmo_strjoin.m | 4 ++-- mvpa/cosmo_strsplit.m | 10 +++++----- mvpa/cosmo_surface_dataset.m | 2 +- mvpa/cosmo_target_dsm_corr_measure.m | 4 ++-- mvpa/cosmo_winner_indices.m | 2 +- tests/test_config.m | 2 +- tests/test_cosmo_notify_test_skipped.m | 2 +- tests/test_crossvalidation_measure.m | 2 +- tests/test_fmri_convert_xform.m | 2 +- tests/test_independent_samples_partitioner.m | 4 ++-- tests/test_montecarlo_cluster_stat_distribution.m | 2 +- tests/test_montecarlo_phase_stat.m | 2 +- tests/test_randomize_targets.m | 2 +- tests/test_show_progress.m | 2 +- tests/test_slice.m | 2 +- 61 files changed, 107 insertions(+), 107 deletions(-) commit 8c328fba3b5f7e8d2b58abd962059a0501b8f1f9 Author: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> Date: Sat Sep 13 14:49:19 2025 +0200 BIG+CLN: code reformatting using MISS_HIT mvpa/cosmo_align.m | 152 +- mvpa/cosmo_anova_feature_selector.m | 84 +- mvpa/cosmo_average_samples.m | 449 ++--- mvpa/cosmo_balance_dataset.m | 150 +- mvpa/cosmo_balance_partitions.m | 418 ++-- mvpa/cosmo_cartprod.m | 220 +- mvpa/cosmo_check_dataset.m | 509 +++-- mvpa/cosmo_check_external.m | 1017 +++++----- mvpa/cosmo_check_neighborhood.m | 381 ++-- mvpa/cosmo_check_partitions.m | 367 ++-- mvpa/cosmo_chunkize.m | 346 ++-- mvpa/cosmo_classify_knn.m | 149 +- mvpa/cosmo_classify_lda.m | 306 +-- mvpa/cosmo_classify_libsvm.m | 227 +-- mvpa/cosmo_classify_matlabcsvm.m | 164 +- mvpa/cosmo_classify_matlabsvm.m | 123 +- mvpa/cosmo_classify_matlabsvm_2class.m | 226 +-- mvpa/cosmo_classify_meta_feature_selection.m | 117 +- mvpa/cosmo_classify_naive_bayes.m | 167 +- mvpa/cosmo_classify_nn.m | 88 +- mvpa/cosmo_classify_svm.m | 166 +- mvpa/cosmo_cluster_neighborhood.m | 638 +++--- mvpa/cosmo_clusterize.m | 236 ++- mvpa/cosmo_config.m | 361 ++-- mvpa/cosmo_confusion_matrix.m | 216 +- mvpa/cosmo_convert_neighborhood.m | 238 ++- mvpa/cosmo_corr.m | 135 +- mvpa/cosmo_correlation_measure.m | 800 ++++---- mvpa/cosmo_cross_neighborhood.m | 340 ++-- mvpa/cosmo_crossvalidate.m | 396 ++-- mvpa/cosmo_crossvalidation_measure.m | 604 +++--- mvpa/cosmo_dataset_slice_fa.m | 62 +- mvpa/cosmo_dataset_slice_sa.m | 64 +- mvpa/cosmo_dim_find.m | 238 ++- mvpa/cosmo_dim_generalization_measure.m | 666 +++--- mvpa/cosmo_dim_insert.m | 236 ++- mvpa/cosmo_dim_match.m | 344 ++-- mvpa/cosmo_dim_prune.m | 301 ++- mvpa/cosmo_dim_remove.m | 165 +- mvpa/cosmo_dim_rename.m | 135 +- mvpa/cosmo_dim_slice.m | 82 +- mvpa/cosmo_dim_transpose.m | 289 ++- mvpa/cosmo_dir.m | 230 ++- mvpa/cosmo_disp.m | 840 ++++---- mvpa/cosmo_dissimilarity_matrix_measure.m | 535 +++-- mvpa/cosmo_distatis.m | 638 +++--- mvpa/cosmo_find_local_extrema.m | 312 ++- mvpa/cosmo_flatten.m | 386 ++-- mvpa/cosmo_fmri_convert_xform.m | 304 ++- mvpa/cosmo_fmri_dataset.m | 2227 ++++++++++----------- mvpa/cosmo_fmri_deoblique.m | 145 +- mvpa/cosmo_fmri_orientation.m | 155 +- mvpa/cosmo_fmri_reorient.m | 281 ++- mvpa/cosmo_fx.m | 172 +- mvpa/cosmo_independent_samples_partitioner.m | 644 +++--- mvpa/cosmo_index_unique.m | 266 ++- mvpa/cosmo_interval_neighborhood.m | 245 ++- mvpa/cosmo_isequaln.m | 96 +- mvpa/cosmo_isfield.m | 175 +- mvpa/cosmo_make_temp_filename.m | 144 +- mvpa/cosmo_map2fmri.m | 781 ++++---- mvpa/cosmo_map2meeg.m | 613 +++--- mvpa/cosmo_map2surface.m | 413 ++-- mvpa/cosmo_map_pca.m | 238 ++- mvpa/cosmo_mask_dim_intersect.m | 244 ++- mvpa/cosmo_match.m | 191 +- mvpa/cosmo_measure_clusters.m | 419 ++-- mvpa/cosmo_meeg_baseline_correct.m | 243 ++- mvpa/cosmo_meeg_chan_neighborhood.m | 542 +++-- mvpa/cosmo_meeg_chan_neighbors.m | 876 ++++---- mvpa/cosmo_meeg_chantype.m | 249 ++- mvpa/cosmo_meeg_dataset.m | 1217 ++++++----- mvpa/cosmo_meeg_find_layout.m | 386 ++-- mvpa/cosmo_meeg_layout_collection.m | 340 ++-- mvpa/cosmo_meeg_read_layout.m | 149 +- mvpa/cosmo_meeg_senstype2layout_mapping.m | 406 ++-- mvpa/cosmo_meeg_senstype_collection.m | 849 ++++---- mvpa/cosmo_meta_feature_selection_classifier.m | 62 +- mvpa/cosmo_montecarlo_cluster_stat.m | 1155 ++++++----- mvpa/cosmo_montecarlo_phase_stat.m | 436 ++-- mvpa/cosmo_naive_bayes_classifier_searchlight.m | 487 +++-- mvpa/cosmo_nchoosek_partitioner.m | 962 +++++---- mvpa/cosmo_neighborhood_split.m | 469 +++-- mvpa/cosmo_nfold_partitioner.m | 181 +- mvpa/cosmo_normalize.m | 436 ++-- mvpa/cosmo_norminv.m | 58 +- mvpa/cosmo_notify_test_skipped.m | 132 +- mvpa/cosmo_oddeven_partitioner.m | 213 +- mvpa/cosmo_overlap.m | 221 +- mvpa/cosmo_parallel_get_nproc_available.m | 264 ++- mvpa/cosmo_parcellfun.m | 158 +- mvpa/cosmo_pca.m | 210 +- mvpa/cosmo_pdist.m | 144 +- mvpa/cosmo_phase_itc.m | 210 +- mvpa/cosmo_phase_stat.m | 170 +- mvpa/cosmo_plot_slices.m | 208 +- mvpa/cosmo_publish_run_scripts.m | 401 ++-- mvpa/cosmo_rand.m | 249 ++- mvpa/cosmo_randomize_targets.m | 205 +- mvpa/cosmo_randperm.m | 119 +- mvpa/cosmo_remove_useless_data.m | 223 +-- mvpa/cosmo_run_tests.m | 277 ++- mvpa/cosmo_sample_unique.m | 143 +- mvpa/cosmo_searchlight.m | 544 +++-- mvpa/cosmo_set_path.m | 79 +- mvpa/cosmo_show_progress.m | 170 +- mvpa/cosmo_singleton_neighborhood.m | 176 +- mvpa/cosmo_skip_test_if_no_external.m | 96 +- mvpa/cosmo_slice.m | 506 ++--- mvpa/cosmo_sphere_offsets.m | 128 +- mvpa/cosmo_spherical_neighborhood.m | 796 ++++---- mvpa/cosmo_split.m | 276 ++- mvpa/cosmo_squareform.m | 133 +- mvpa/cosmo_stack.m | 486 +++-- mvpa/cosmo_stat.m | 1045 +++++----- mvpa/cosmo_statcode.m | 514 +++-- mvpa/cosmo_strjoin.m | 131 +- mvpa/cosmo_strsplit.m | 202 +- mvpa/cosmo_structjoin.m | 226 ++- mvpa/cosmo_surface_dataset.m | 628 +++--- mvpa/cosmo_surficial_neighborhood.m | 905 ++++----- mvpa/cosmo_synthetic_dataset.m | 986 +++++---- mvpa/cosmo_tail.m | 157 +- mvpa/cosmo_target_dsm_corr_measure.m | 615 +++--- mvpa/cosmo_tiedrank.m | 211 +- mvpa/cosmo_type.m | 30 +- mvpa/cosmo_unflatten.m | 363 ++-- mvpa/cosmo_vol_coordinates.m | 188 +- mvpa/cosmo_vol_grid_convert.m | 330 ++- mvpa/cosmo_warning.m | 191 +- mvpa/cosmo_winner_indices.m | 169 +- mvpa/cosmo_wtf.m | 310 ++- tests/test_align.m | 127 +- tests/test_anova_feature_selector.m | 38 +- tests/test_average_samples.m | 501 +++-- tests/test_balance_dataset.m | 121 +- tests/test_balance_partitions.m | 392 ++-- tests/test_cartprod.m | 62 +- tests/test_check_dataset.m | 160 +- tests/test_check_external.m | 88 +- tests/test_check_neighborhood.m | 225 +-- tests/test_check_partitions.m | 173 +- tests/test_chunkize.m | 289 ++- tests/test_classify.m | 590 +++--- tests/test_cluster_neighborhood.m | 653 +++--- tests/test_clusterize.m | 61 +- tests/test_config.m | 148 +- tests/test_confusion_matrix.m | 91 +- tests/test_convert_neighborhood.m | 113 +- tests/test_corr.m | 116 +- tests/test_correlation_measure.m | 328 ++- tests/test_cosmo_dataset_operations.m | 89 +- tests/test_cosmo_fmri_dataset.m | 179 +- tests/test_cosmo_notify_test_skipped.m | 82 +- tests/test_cosmo_skip_test_if_no_external.m | 37 +- tests/test_cross_neighborhood.m | 355 ++-- tests/test_crossvalidate.m | 79 +- tests/test_crossvalidation_measure.m | 579 +++--- tests/test_dim_find.m | 104 +- tests/test_dim_generalization_measure.m | 382 ++-- tests/test_dim_insert.m | 157 +- tests/test_dim_match.m | 209 +- tests/test_dim_prune.m | 223 +-- tests/test_dim_remove.m | 91 +- tests/test_dim_rename.m | 44 +- tests/test_dim_slice.m | 51 +- tests/test_dim_transpose.m | 168 +- tests/test_dir.m | 143 +- tests/test_disp.m | 427 ++-- tests/test_dissimilarity_matrix_measure.m | 116 +- tests/test_distatis.m | 281 ++- tests/test_external_neuroelf.m | 90 +- tests/test_external_surfing.m | 236 ++- tests/test_find_local_extrema.m | 90 +- tests/test_flatten.m | 160 +- tests/test_fmri_convert_xform.m | 92 +- tests/test_fmri_dataset.m | 722 ++++--- tests/test_fmri_deoblique.m | 39 +- tests/test_fmri_io.m | 699 ++++--- tests/test_fmri_orientation.m | 255 ++- tests/test_fx.m | 140 +- tests/test_independent_samples_partitioner.m | 455 ++--- tests/test_index_unique.m | 209 +- tests/test_interval_neighborhood.m | 185 +- tests/test_isequaln.m | 105 +- tests/test_isfield.m | 84 +- tests/test_map_pca.m | 338 ++-- tests/test_mask_dim_intersect.m | 208 +- tests/test_match.m | 123 +- tests/test_measure_clusters.m | 164 +- tests/test_meeg_baseline_correct.m | 282 ++- tests/test_meeg_chan_neighborhood.m | 160 +- tests/test_meeg_chan_neighbors.m | 765 ++++--- tests/test_meeg_chantype.m | 188 +- tests/test_meeg_find_layout.m | 436 ++-- tests/test_meeg_io.m | 901 ++++----- tests/test_meeg_layout_collection.m | 257 ++- tests/test_meeg_read_layout.m | 169 +- tests/test_meeg_senstype_collection.m | 345 ++-- tests/test_meeg_source.m | 360 ++-- tests/test_montecarlo_cluster_stat.m | 909 ++++----- tests/test_montecarlo_cluster_stat_distribution.m | 150 +- tests/test_montecarlo_phase_stat.m | 399 ++-- tests/test_naive_bayes_classifier_searchlight.m | 251 ++- tests/test_neighborhood_split.m | 138 +- tests/test_normalize.m | 317 ++- tests/test_norminv.m | 56 +- tests/test_oddeven_partitioner.m | 128 +- tests/test_parallel_get_nproc_available.m | 212 +- tests/test_parcellfun.m | 160 +- tests/test_partitions.m | 258 ++- tests/test_pca.m | 260 ++- tests/test_pdist.m | 41 +- tests/test_phase_itc.m | 170 +- tests/test_phase_stat.m | 278 ++- tests/test_plot_slices.m | 33 +- tests/test_publish_run_scripts.m | 163 +- tests/test_rand.m | 101 +- tests/test_randomize_targets.m | 62 +- tests/test_randperm.m | 156 +- tests/test_remove_useless_data.m | 138 +- tests/test_run_tests.m | 169 +- tests/test_sample_unique.m | 148 +- tests/test_searchlight.m | 215 +- tests/test_show_progress.m | 94 +- tests/test_singleton_neighborhood.m | 87 +- tests/test_slice.m | 251 ++- tests/test_spherical_neighborhood.m | 644 +++--- tests/test_split.m | 91 +- tests/test_squareform.m | 149 +- tests/test_stack.m | 158 +- tests/test_stat.m | 729 ++++--- tests/test_statcode.m | 207 +- tests/test_strjoin.m | 41 +- tests/test_strsplit.m | 76 +- tests/test_structjoin.m | 101 +- tests/test_surface_io.m | 389 ++-- tests/test_surficial_io_gifti.m | 320 ++- tests/test_surficial_io_niml_dset.m | 291 ++- tests/test_surficial_neighborhood.m | 818 ++++---- tests/test_synthetic_dataset.m | 93 +- tests/test_tail.m | 135 +- tests/test_target_dsm_corr_measure.m | 570 +++--- tests/test_tiedrank.m | 218 +- tests/test_type.m | 49 +- tests/test_vol_coordinates.m | 248 ++- tests/test_vol_grid_convert.m | 99 +- tests/test_warning.m | 33 +- tests/test_wtf.m | 105 +- 249 files changed, 36041 insertions(+), 37903 deletions(-) commit 74ed3185a402d9d2ad6369505d9a1036a7d3df6d Author: Nikolaas N. Oosterhof <n.n.oosterhof@googlemail.com> Date: Sat Sep 13 13:07:45 2025 +0200 ENH: minor compatibility updates (#212) * ENH: minor compatibility updates * CMPT: add extra safety on not returning negative p values * FIX: do not transpose text message * TST+OCTV: update test after changed behaviour of Octave pca function * TST+OCTV: support Octave pca row vector results * TST: fix version check * DOC: fix indent * TST: limit use of findstr * DOC+RF: minor changes --------- Co-authored-by: Nikolaas N. Oosterhof <n.n.oosterhof@gmail.com> .gitignore | 2 ++ COPYING | 2 +- mvpa/cosmo_check_external.m | 28 ++++++++++++++++++ mvpa/cosmo_check_neighborhood.m | 2 +- mvpa/cosmo_dim_match.m | 2 +- mvpa/cosmo_dim_prune.m | 2 +- mvpa/cosmo_dissimilarity_matrix_measure.m | 42 +++++++++++++-------------- mvpa/cosmo_run_tests.m | 6 ++-- mvpa/cosmo_squareform.m | 2 +- mvpa/cosmo_stat.m | 6 +++- tests/test_check_external.m | 10 +++---- tests/test_classify.m | 9 +++++- tests/test_corr.m | 10 +------ tests/test_cosmo_notify_test_skipped.m | 4 +-- tests/test_index_unique.m | 9 ++---- tests/test_meeg_baseline_correct.m | 9 +----- tests/test_parallel_get_nproc_available.m | 9 +++--- tests/test_pca.m | 48 +++++++++++++++++++++---------- tests/test_run_tests.m | 4 +-- tests/test_stat.m | 24 ++++++++++++++-- 20 files changed, 146 insertions(+), 84 deletions(-)
