.. _`matindex_skl_run`: ================================== Runnable examples - skeleton files ================================== .. toctree:: :maxdepth: 2 :hidden: matlab/run_anatomical_dataset_basics_skl matlab/run_bad_double_dipping_analysis_skl matlab/run_classify_lda_skl matlab/run_classify_naive_bayes_skl matlab/run_classify_svm_skl matlab/run_compare_dsm_skl matlab/run_correlation_measure_skl matlab/run_cross_validation_skl matlab/run_crossvalidation_measure_skl matlab/run_crossvalidation_searchlight_skl matlab/run_dataset_basics_skl matlab/run_demean_skl matlab/run_feature_selection_classifier_skl matlab/run_fmri_correlation_searchlight_trivial_skl matlab/run_load_datasets_skl matlab/run_measure_searchlight_skl matlab/run_meeg_time_generalization_skl matlab/run_meeg_time_generalization_mcc_skl matlab/run_meeg_timefreq_measures_skl matlab/run_meeg_timelock_measures_skl matlab/run_multiple_comparison_correction_skl matlab/run_nfold_crossvalidate_skl matlab/run_nifti_basics_skl matlab/run_operations_on_datasets_skl matlab/run_permutation_test_skl matlab/run_roi_neighborhood_skl matlab/run_rsa_visualize_skl matlab/run_rsm_measure_searchlight_skl matlab/run_setting_sample_attr_skl matlab/run_sphere_offsets_skl matlab/run_sphere_offsets_searchlight_skl matlab/run_spherical_neighborhood_searchlight_skl matlab/run_splithalf_correlations_skl matlab/run_splithalf_correlations_searchlight_skl matlab/run_splithalf_correlations_single_sub_skl matlab/run_surface_searchlight_skl =================================================== =============================================================================================================================================================================================================================== --------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- **All functions** --------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- :ref:`run_anatomical_dataset_basics_skl` Anatomical dataset basics In this example, load a brain as a CoSMoMVPA datset and visualize it in matlab :ref:`run_bad_double_dipping_analysis_skl` Double dipping :ref:`run_classify_lda_skl` odd-even classification with LDA classifier :ref:`run_classify_naive_bayes_skl` Two-class classification with naive baysian classifier :ref:`run_classify_svm_skl` Classification using svm :ref:`run_compare_dsm_skl` RSA Tutorial Compare DSMs :ref:`run_correlation_measure_skl` Exercise with cosmo_correlation_measure Split-half correlation analysis using cosmo_correlation_measure :ref:`run_cross_validation_skl` Cross validation example with multiple classifiers This example runs cross validation and shows confusion matrix using multiple classifiers :ref:`run_crossvalidation_measure_skl` Cross validation measure example This example runs cross validation with the cosmo_crossvalidation_measure function, using a classifier with n-fold crossvalidation. It shows the confusion matrices using multiple classifiers :ref:`run_crossvalidation_searchlight_skl` Crossvalidation searchlight :ref:`run_dataset_basics_skl` Dataset basics :ref:`run_demean_skl` Example of de-meaning :ref:`run_feature_selection_classifier_skl` An example of using feature selection with a classifier :ref:`run_fmri_correlation_searchlight_trivial_skl` Demo: fMRI searchlights with split-half correlation :ref:`run_load_datasets_skl` Dataset Basics Load datasets using cosmo_fmri_dataset :ref:`run_measure_searchlight_skl` Searchlight using a data measure :ref:`run_meeg_time_generalization_mcc_skl` MEEG time generalization multiple comparison correction This example shows MVPA analyses performed on MEEG data. :ref:`run_meeg_time_generalization_skl` MEEG time generalization in a region (in space-time) of interest :ref:`run_meeg_timefreq_measures_skl` MEEG time-frequency searchlight :ref:`run_meeg_timelock_measures_skl` MEEG time-lock searchlight :ref:`run_multiple_comparison_correction_skl` Multiple comparison correction with Threshold-Free Cluster Enhancement :ref:`run_nfold_crossvalidate_skl` n-fold cross-validation classification with LDA classifier :ref:`run_nifti_basics_skl` NIFTI basics In this example, load a brain and visualize it in matlab :ref:`run_operations_on_datasets_skl` Dataset Basics Run operations on datasets :ref:`run_permutation_test_skl` Permutation test example :ref:`run_roi_neighborhood_skl` ROI neighborhood example :ref:`run_rsa_visualize_skl` RSA Visualize :ref:`run_rsm_measure_searchlight_skl` Searchlight for representational similarity analysis :ref:`run_setting_sample_attr_skl` Dataset Basics (setting sample attributes) :ref:`run_sphere_offsets_searchlight_skl` Searchlight analysis in the volume :ref:`run_sphere_offsets_skl` Show sphere offsets for used in spherical neighborhood :ref:`run_spherical_neighborhood_searchlight_skl` Spherical searchlight this example implements a spherical searchlight using cosmo_spherical_neighborhood and performs crossvalidation with a nearest neigh classifier :ref:`run_splithalf_correlations_searchlight_skl` Volumetric fMRI Searchlight :ref:`run_splithalf_correlations_single_sub_skl` Roi-based MVPA for single subject (run_split_half_correlations_single_sub) :ref:`run_splithalf_correlations_skl` roi-based MVPA with group-analysis :ref:`run_surface_searchlight_skl` Demo: fMRI surface-based searchlights with LDA classifier =================================================== ===============================================================================================================================================================================================================================